Protein Info for HGI48_RS12570 in Dickeya dianthicola 67-19

Annotation: osmotically-inducible lipoprotein OsmB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 71 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05433: Rick_17kDa_Anti" amino acids 32 to 69 (38 residues), 27.7 bits, see alignment E=1e-10

Best Hits

Swiss-Prot: 66% identical to OSMB_ECOLI: Osmotically-inducible lipoprotein B (osmB) from Escherichia coli (strain K12)

KEGG orthology group: K04062, osmotically inducible lipoprotein OsmB (inferred from 94% identity to ddd:Dda3937_04610)

Predicted SEED Role

"Osmotically inducible lipoprotein B precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CKA1 at UniProt or InterPro

Protein Sequence (71 amino acids)

>HGI48_RS12570 osmotically-inducible lipoprotein OsmB (Dickeya dianthicola 67-19)
MQINKKLTTAVLAMVIVSTLAGCAGMNKRQRNTAIGAGIGALGGAVLTNGSAVGTVGGAA
VGGIIGHQTTR