Protein Info for HGI48_RS11405 in Dickeya dianthicola 67-19

Annotation: oligogalacturonate-specific porin KdgM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06178: KdgM" amino acids 14 to 239 (226 residues), 322.4 bits, see alignment E=1.6e-100

Best Hits

Swiss-Prot: 92% identical to KDGM_DICD3: Oligogalacturonate-specific porin KdgM (kdgM) from Dickeya dadantii (strain 3937)

KEGG orthology group: None (inferred from 92% identity to ddd:Dda3937_03362)

Predicted SEED Role

"N-acetylneuraminic acid outer membrane channel protein NanC" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RE98 at UniProt or InterPro

Protein Sequence (239 amino acids)

>HGI48_RS11405 oligogalacturonate-specific porin KdgM (Dickeya dianthicola 67-19)
MKIKLLTLAVASLVSVNALAVSIDYRHEMQDTTQAGHKDRLLISHRFANGFGLSSEVKWA
QSSADKTPNKPFNEQVSNGTEVVASYVYKFNSIFSIEPGFSLESSSSNNNYRPYLRGRAN
VTDDLSVALRYRPYFKRNSGSINNTKGDSTMDKGYTLTGNIDYNFLDVYTLGYELEYKKG
TSGETVLSDNDNYDITHSVKLSYKWDKNWKPYVELGNVSGSKTTDERQTRYRVGVQYSF