Protein Info for HGI48_RS11105 in Dickeya dianthicola 67-19

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 PF04257: Exonuc_V_gamma" amino acids 10 to 362 (353 residues), 332.7 bits, see alignment E=2.2e-103 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1097 (1087 residues), 1129 bits, see alignment E=0 PF17946: RecC_C" amino acids 836 to 1075 (240 residues), 154.7 bits, see alignment E=3e-49

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 88% identity to dze:Dd1591_2024)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RDS3 at UniProt or InterPro

Protein Sequence (1158 amino acids)

>HGI48_RS11105 exodeoxyribonuclease V subunit gamma (Dickeya dianthicola 67-19)
MSENRLQPGLMAIHSNHPEALRNVLVSWMAANPLGGLENELILVQSNGIGQWLKLALARD
PRDGGCGVAAALDIQLPSRFFWQVYRSVLGNEQVPETSPFDKSLLVWRLVRLLPELLAQP
EFAALARFLQQDADLRKRYQLAERLADLFDQYQVYRADWLAQWAAGQDVLATSRRGVEPL
PEDQRWQPLLWRALLRDTGEALSGTSRAALHRRFLDDVQRRGDADRPAGLPSRVMVFGIS
SLPQQALELLAAIGRWTQIFMCVHNPCQYYWGDIIADKDLLRAERARQRRKPGMPDVLAL
EELHQHAHPLLAAWGKQGRDYIGLLDEYDQSEHYSSLIERRDLFFSNGNDCLLHHLQDDI
LDLRPLAESRARWPAVDPHQDRSIRFHVAHSAQREMEVLHDQLLAAFAADPTLRPRDVIV
MVPDINGYAPHIQAVFGLIDRQDPRYIPFSVADRGPRQNNLLLAALERLLNLPQSRVAVS
DVLDLLEVPAVRQRFAIAEEQLPLLQRWIRAANVRWGLHARQRQSLDLPDAPEQNSWFFG
LRRMLLGYAVGAGDAWRDIEPLDEIGGLDAVLAGQLALLLDRLDYSWQQLCQPATPAQWG
ERLRALLGTFFAADEGEDGFMLLQLDEGLQNWLEACESVALEQSLPLSVVREHWLGLFEQ
SSLTQPFFAGSVTFATLMPMRAIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRPGDRS
RREDDRYLFLEALLSARERLYLSWVGRSIHDNSERPPSVLVAQLRDHLSNGWRTADGQDV
LPALTMEHRLQPFSPDYFTAGSPLFSYAREWRAGLLPQHAPATDAALDEYRQDGVLTLRQ
LADFARDPVRSFFRLRLNVWFEQEDATSQDQEPFAIDALENWRLQHELIQVQKAALHQRI
PREQALTEQLARIARRGELAPGGFTAVLEQDLAEPMADLFTRYEQERETWPEPAPDEPLS
LPDLPLEDWLNELRTDAQGNRCRLVLESGGLLHPTRRSYRLDKLLPFWVAHLAGHLGGQP
LHSTLVSKNGTVYLPALEPEQAKAYWQALIDAWREGMRYPLPLAVKTGFRWLEAGGAPEQ
PPDGEAGNAARQCYEEHDPANRKFAELASNAYLARAFPNFDQLWANGEFARWAQQLLAPL
YQTLKAASAKNKKSGGQP