Protein Info for HGI48_RS10980 in Dickeya dianthicola 67-19

Annotation: tyrosine-type recombinase/integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 PF13356: Arm-DNA-bind_3" amino acids 2 to 85 (84 residues), 88.5 bits, see alignment E=3.9e-29 PF14659: Phage_int_SAM_3" amino acids 98 to 150 (53 residues), 23.1 bits, see alignment 1.1e-08 PF00589: Phage_integrase" amino acids 204 to 368 (165 residues), 74.5 bits, see alignment E=1.4e-24

Best Hits

KEGG orthology group: None (inferred from 97% identity to etr:ETAE_1397)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RDQ5 at UniProt or InterPro

Protein Sequence (393 amino acids)

>HGI48_RS10980 tyrosine-type recombinase/integrase (Dickeya dianthicola 67-19)
MLTDTQCRTARPKDKLYRLNDFNGLYLEVKPNGKKAWRYRFKLNGKSSMFALGEYPTVKL
AEAREKCEQARKQVADGVSPTQARQLDKIRKVNDASNTFELIAKEWLQMKDWAEITKTRR
LDMLERVVFPAIGKLPIREITPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATLR
ADSDPVWPVRKAIPANKTQHKQALNPQQIGNLLSCFDNSRGSYQVNYCMWLMWWTLARPA
EVTEAEWVEFDLDNALWTIPATRMKARREHVIPLPSQAVNMLRTLQGLTGHRQHLFPGRN
NPRGPMTSHSLRQLLKSLGWSGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNNVR
RTYNHATYLDERKVMMQDWADKLDGWVQATAEV