Protein Info for HGI48_RS10635 in Dickeya dianthicola 67-19

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF00892: EamA" amino acids 27 to 160 (134 residues), 37.3 bits, see alignment E=1.4e-13 amino acids 170 to 305 (136 residues), 50.2 bits, see alignment E=1.5e-17

Best Hits

KEGG orthology group: None (inferred from 99% identity to ddd:Dda3937_00067)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RDV0 at UniProt or InterPro

Protein Sequence (313 amino acids)

>HGI48_RS10635 DMT family transporter (Dickeya dianthicola 67-19)
MQVENVKNTQTAQSYRSEQAQPAGMIFGYVAMAIAVIAWSLFAVSIRAISASPLSIADVA
LFRFGIPALLLLPWLPARLYQLSNLRPREIIAVLVGGGVPYFFIASLGGHLTTAAHVAAL
IAGTSPLSVALLAFVLFRHRVGTTQLRAILLILVGVVSMVLPGFSTTMISGSAMLLLASL
LWGGYTLAIRRSGLDTIGCVLLLSLPSALLLLGLMTTGVVESHLSSVTLHEMLPFLLIQG
LGTGIISSLSYTVAVQKLGPNRSALIGSLCPALAYLLAVPLLGERFSLPNVFGIVVITLG
VILANAPFNRSSR