Protein Info for HGI48_RS09040 in Dickeya dianthicola 67-19

Annotation: SDR family NAD(P)-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00106: adh_short" amino acids 3 to 184 (182 residues), 148.9 bits, see alignment E=3.3e-47 PF08659: KR" amino acids 4 to 154 (151 residues), 30.2 bits, see alignment E=1e-10 PF01370: Epimerase" amino acids 5 to 156 (152 residues), 25.6 bits, see alignment E=1.9e-09 PF13561: adh_short_C2" amino acids 9 to 183 (175 residues), 104.2 bits, see alignment E=2.1e-33 PF08643: DUF1776" amino acids 19 to 172 (154 residues), 25.2 bits, see alignment E=2.6e-09

Best Hits

KEGG orthology group: None (inferred from 89% identity to ddc:Dd586_1415)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RCM8 at UniProt or InterPro

Protein Sequence (268 amino acids)

>HGI48_RS09040 SDR family NAD(P)-dependent oxidoreductase (Dickeya dianthicola 67-19)
MKKTIVITGASSGFGLMLANKLHKEGFNVIGTSRDPEKYASKVPFKLLRLDIDEDSSIQS
FTQALFAHTRQLDVLVNNAGYMVTGIAEETPIDVGRQQFETNFWGTIKVTNALLPYFRKQ
KGGQIITVSSIVGLIGPPNLSYYTASKHAVEGYFKSLRFELDQFNIKVSMVEPVWFKTHL
GDNSFSPAGHTIADYDAYRRQVQAVTQKGMNEAEAPDAVVSTITRLIQTKKPRFSNPVGK
MTGMILFLQNYMPKMFEGAMLKSVKTAK