Protein Info for HGI48_RS08570 in Dickeya dianthicola 67-19

Annotation: PAAR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1449 transmembrane" amino acids 51 to 81 (31 residues), see Phobius details amino acids 87 to 111 (25 residues), see Phobius details PF05488: PAAR_motif" amino acids 130 to 192 (63 residues), 58.4 bits, see alignment (E = 1.3e-19) PF20148: DUF6531" amino acids 296 to 371 (76 residues), 55.8 bits, see alignment 9.5e-19 PF05593: RHS_repeat" amino acids 501 to 536 (36 residues), 28.2 bits, see alignment (E = 4e-10) amino acids 568 to 600 (33 residues), 22.4 bits, see alignment (E = 2.5e-08) amino acids 607 to 642 (36 residues), 26.5 bits, see alignment (E = 1.4e-09) amino acids 691 to 726 (36 residues), 24.5 bits, see alignment (E = 5.6e-09) amino acids 756 to 793 (38 residues), 23.4 bits, see alignment (E = 1.2e-08) amino acids 781 to 814 (34 residues), 28.8 bits, see alignment (E = 2.5e-10) amino acids 821 to 857 (37 residues), 26.7 bits, see alignment (E = 1.2e-09) amino acids 862 to 894 (33 residues), 28 bits, see alignment (E = 4.6e-10) TIGR01643: YD repeat (two copies)" amino acids 501 to 536 (36 residues), 20 bits, see alignment (E = 7.3e-08) amino acids 573 to 603 (31 residues), 18 bits, see alignment (E = 3.2e-07) amino acids 607 to 646 (40 residues), 24.7 bits, see alignment (E = 2.4e-09) amino acids 691 to 730 (40 residues), 25.3 bits, see alignment (E = 1.6e-09) amino acids 756 to 797 (42 residues), 20.9 bits, see alignment (E = 3.9e-08) amino acids 780 to 819 (40 residues), 25.8 bits, see alignment (E = 1.1e-09) amino acids 821 to 859 (39 residues), 17.4 bits, see alignment (E = 4.8e-07) amino acids 841 to 880 (40 residues), 16 bits, see alignment (E = 1.4e-06) TIGR03696: RHS repeat-associated core domain" amino acids 1243 to 1317 (75 residues), 69.6 bits, see alignment 2.5e-23 PF13930: Endonuclea_NS_2" amino acids 1360 to 1415 (56 residues), 30.5 bits, see alignment (E = 7.3e-11)

Best Hits

Swiss-Prot: 90% identical to RHSA_DICD3: Probable deoxyribonuclease RhsA (rhsA) from Dickeya dadantii (strain 3937)

KEGG orthology group: None (inferred from 90% identity to ddd:Dda3937_01758)

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RCE2 at UniProt or InterPro

Protein Sequence (1449 amino acids)

>HGI48_RS08570 PAAR domain-containing protein (Dickeya dianthicola 67-19)
MLNDILNRVARVGAMHAGNRPNPPADRPQPCQGKPPTSPGKTIKHKSFKGAIFGAIAGAL
VAAAAFAVAGAVAGAIAVAVIGTGGMGAALVVGVVKLAAGFGAVSLLGGLIDSVSSKVSA
MVDSGSPSFGPVMAGSGNVFVEKQPVARATKDTVACTRHNSPQLIAQGSESVFVNDAPAA
RIDDKTVCGATIKEGASTVFFGSGQGTYLEIAEEFTALQRALLIAVEFLVPPSRGMFRGL
GKLFTRGPMAVLRGMRAGAATTLRGLREAVSCASDGFRNSRGLSRITEAVRGFLKDPVYI
ASGEVIESRTDIELGQTLPLVFERTYRSASVHVGLPGRGWHDSWSEVATVSRDGLNTHVV
ITLAQGYDIDFTFHQDVQAVYCPHYPEFTLHRRGEGFSLWHRDQQTWRDFSVVQGERRLL
SAIHDTHDNRIELVRDPKGYLRQLRHSDGVTLLLVWRGEYLHQIQRIDGGQKTLLAEYRQ
DERGRLVEADATHAYHLYYEYDAAHRLTRWHDNDQTWARYEYDAQGRCVYTTCADGFLTA
RFDYLPDRVVMTDGLGQRSEFGFNDLHLMSWEKSPLGHVTRYEYDEVGNLLREISPAGRV
VEFRYLDDTGRVSTFTDGSGHQWQYDYDEALRLCGVTDPLGREWGWVYDAEGNPERLTGP
DASEVRFTWSRYGLLTQVSDATGEVQARLQYDHRQRLLSATDAEGRTRQLRYDGQDRVVQ
WQRADGARFRLGYRRASWTLPEQLIRPDDKEEQRQYDRHNNLLSYVDGNGALWRQSFGPF
DLLTARTDAEGRTWRYEYDRESQRLIAVIAPDGSRWQWWLDADGRVIRERDMTGTETHYG
YDEDGLCVSVRNGEGDTRHVLYDARGLLLRETAPDDTLHYHYDAVGRLTEVSSATAHVQL
DYDLRDRVVREWHNGTLLTRQVDDAARTVTRTLTWDGDAEDATGTLAPLTSLLHYTRTGE
LRQVQLPDGAELTLTQDAAGRESHRSGGSGFVQQREYDVMGWLTREQSGAQQDGHLLAAQ
TREYRYDGAGNLTGVRHNRDAEGYRLDATGRVQEVLSGGAGKPVDTLARFHYTRTGLPQE
AGRLTEWQAGRLVQHDDTHYQYDRAGRLIRKQVVQPGYRPQVWQYRWDSRNQLRVVDTPA
GERWLYRYDPFGRRVGKRCDQKAEETRYLWDGDQIAEIRHYRHGQLVARRHWVYNGWELV
VQQRQHPGGDWETDFVTSSQNGTPQALFTPDGTLRWQAPKATLWGQRQAEKSESPDPGLA
FAGQLRDSESGLCYNRFRYYDPAGGCYVSPDPIGVLGGESNYGYVSNPMCWVDPFGLAKC
PTLTHGANGEILSAKATVSKAELRTGSGTNQSSRDYARSLGNQTDDAGHILGNVLGGQGG
KGNVFPQLPAINRGQYRDFEKVVKDYIGQHGSVDIEWAFKYGNGGTRPTEIYYDVYQNGQ
KVFGRIFNN