Protein Info for HGI48_RS07975 in Dickeya dianthicola 67-19

Annotation: type VI secretion system lipoprotein TssJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR03352: type VI secretion lipoprotein, VC_A0113 family" amino acids 6 to 164 (159 residues), 140.1 bits, see alignment E=2.2e-45 PF12790: T6SS-SciN" amino acids 43 to 161 (119 residues), 107.6 bits, see alignment E=1.7e-35

Best Hits

KEGG orthology group: K11906, type VI secretion system protein VasD (inferred from 94% identity to ddc:Dd586_1296)

Predicted SEED Role

"Type VI secretion lipoprotein/VasD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RC56 at UniProt or InterPro

Protein Sequence (173 amino acids)

>HGI48_RS07975 type VI secretion system lipoprotein TssJ (Dickeya dianthicola 67-19)
MRRTGWLCALMLLLPGCATLGKMATVAANPDIQVGSNDNQPSTVGFSLVAEPDVNPSESG
DAAPIEFQLVMLAEDSRLLATDYDQVTTDIEKALAKNYLSHQDYTLLPGQFKYLPPVKLD
EKVHYIGVIAKYADPDSAEWRKVVKLKNTGRTYQLLVHLRREEVEIKKDQEEE