Protein Info for HGI48_RS07695 in Dickeya dianthicola 67-19

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 773 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF07715: Plug" amino acids 78 to 186 (109 residues), 48.5 bits, see alignment E=1.1e-16 PF00593: TonB_dep_Rec" amino acids 312 to 737 (426 residues), 112.4 bits, see alignment E=5.1e-36

Best Hits

KEGG orthology group: None (inferred from 96% identity to dze:Dd1591_2637)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RC41 at UniProt or InterPro

Protein Sequence (773 amino acids)

>HGI48_RS07695 TonB-dependent receptor (Dickeya dianthicola 67-19)
MFFKKNVLKKNVFWRYPVVIGSVLAMQGLAQAADAPTAAANAVATPDAATSAEATADPAQ
AVRLKRVQVNAQRRQAQQQTSLASVVDGKELEQDRLYRFEDLSQAVTGVDIAAADALDTR
VTIRGIGDGGGSEINIGMPSSVGLFLDGVYLSRPGMLSNDLLDIDAVSVLKGPQGTLYGF
NTTGGAVDIRSRRPTFKPEVSLEQSFGQRGYVQSKLMASGALSDDWAGRINLSHTEKGGY
VYNVQNGHQLGGSNSNGVRGQLLYQPDDGFSLRIIGDYSEATSYPVMSLVDSYPVGGVDQ
FRTRAAAVGARLVDGRQVALDDETKNRVAQGGGSVEANWRLRNGYTLNSLSSLRYFRFLP
GTADGLSIPLYQDSGADARDRTWGQRFWVDSPKGGLADYSFGVDYWGENLDTFGHDRYNN
NARVTRWYGNTSNTGKFVQRFGSLEDTVYSAFARSTWHLGDRFDLTTGVRETYEKKTGSF
RRINKNDFNSGDLSQSHHLPSATVSLNWYATPNVTPYLTLAYGEKAGGLNISSGAAKQAG
VDSLYIKPEKTRAAELGVKTHWLQRRVEWNTALFWNEVSEFQTTAYDEETLSSYLVNAGK
FRSRGVESQLALRPVEGLTLSVNGTLLDASYLDFKNAKCPPEVTLAANPPTSCDLSGERV
FSSPKLTYNARIRYEWQAVNNLQAFVAGRWAWRSWAYGTVDNSEFTRIPAYGVLNLSTGV
SGKQDGHAWRATLWLNNALDKTYYRTVKSGDYGSAYGVLGEPRTLGITLGYDF