Protein Info for HGI48_RS06925 in Dickeya dianthicola 67-19

Annotation: D-galactonate utilization transcriptional regulator DgoR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 PF00392: GntR" amino acids 9 to 71 (63 residues), 54.4 bits, see alignment E=7.8e-19 PF07729: FCD" amino acids 101 to 221 (121 residues), 93.6 bits, see alignment E=1.3e-30

Best Hits

Swiss-Prot: 81% identical to DGOR_ECOLI: Galactonate operon transcriptional repressor (dgoR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eca:ECA4419)

Predicted SEED Role

"D-Galactonate repressor DgoR" in subsystem D-galactonate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CYS0 at UniProt or InterPro

Protein Sequence (232 amino acids)

>HGI48_RS06925 D-galactonate utilization transcriptional regulator DgoR (Dickeya dianthicola 67-19)
MNKQELSKTDRIILDIGQQIVGGKYAPGTPLPAEAELCEEFQTSRNIIREVFRALMAKRL
VDVKRYRGAFVAARNQWNYLDTDVLQWVLASDYDPRLISAMSEVRNLVEPTIARWAAERA
TSSELAVIEAALNDMISNHQNRDAFNEADIRFHEAVLAAVHNPVLQQLSVAISSLQRAVF
ERTYMPDEDNMPRTLREHQDLYDAIRHQDIEAAERAALTMIASSTKRLKDIT