Protein Info for HGI48_RS06890 in Dickeya dianthicola 67-19

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 PF03472: Autoind_bind" amino acids 74 to 224 (151 residues), 75.6 bits, see alignment E=4.5e-25 PF08281: Sigma70_r4_2" amino acids 234 to 283 (50 residues), 32.6 bits, see alignment 7.7e-12 PF00196: GerE" amino acids 240 to 295 (56 residues), 62.3 bits, see alignment E=3.8e-21

Best Hits

KEGG orthology group: None (inferred from 87% identity to ddd:Dda3937_00840)

Predicted SEED Role

"Transcriptional regulator ahyR/asaR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RBQ5 at UniProt or InterPro

Protein Sequence (301 amino acids)

>HGI48_RS06890 LuxR family transcriptional regulator (Dickeya dianthicola 67-19)
MGRTAVSEKAAVSEKIAVSGETAVSEKTAVSGELAVDGKAAAVRNAALRGETTARLAVHD
SDHRRTAAFESAFGQLYDDVRQLGFDALIYDYTPVPLSLEGDLITPSLLRTRNVPDDMVS
LWCQSGYYQVDPVQIHALGSCAPFTWSYCRPENTSLHRVLNEQHRPVSHYMQNHNMRCGV
TVPLHLPKGGFVTVTAIHTGLDTDNEIETVLARMGLLTHTFQEHVFPLFDEAWYHCRHMH
LSPREQECLAWSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQAVVRAMHYRL
L