Protein Info for HGI48_RS06590 in Dickeya dianthicola 67-19

Annotation: DUF554 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 67 (31 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details PF04474: DUF554" amino acids 2 to 230 (229 residues), 203.5 bits, see alignment E=1.5e-64

Best Hits

KEGG orthology group: K07150, (no description) (inferred from 98% identity to ddd:Dda3937_03983)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RJ93 at UniProt or InterPro

Protein Sequence (238 amino acids)

>HGI48_RS06590 DUF554 domain-containing protein (Dickeya dianthicola 67-19)
MIGPIINGAAILIGGALGVALHRFIPQRMRDGLPPAFAMVSIAMGVTLVVKVHQLSAVAL
AIILGVGIGELLRLEAGVQKGAILIERLLSRVVPPPEHQLPQDVYTQNFTALIVLFCASG
TGVVGSMTEGLTGDYQLLIIKSALDIFTALIFAITLGVAVMSIAVPQFLVQTLLFFSARL
IMPFMNDITMGDFAACGGIVMMAVGLRIAQIKTFAVVNFLPALVLIIPFSLYWHRLFP