Protein Info for HGI48_RS04365 in Dickeya dianthicola 67-19

Annotation: RpoE-regulated lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF06572: DUF1131" amino acids 28 to 198 (171 residues), 275 bits, see alignment E=1.1e-86

Best Hits

Swiss-Prot: 51% identical to YFEY_ECOLI: Uncharacterized protein YfeY (yfeY) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to dze:Dd1591_3284)

Predicted SEED Role

"Predicted outer membrane lipoprotein YfeY"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RAP5 at UniProt or InterPro

Protein Sequence (202 amino acids)

>HGI48_RS04365 RpoE-regulated lipoprotein (Dickeya dianthicola 67-19)
MTKVRPLFLIFPLLLAGCSTLSGFSWPSFSWSSLSPFNWFGHHPTVSDAGVGGINAKTPM
LESALNDALNGDYRLRGGMETRNGKLVSIYEALKDDSVRLEISGAPKGQVTQVAVMDKAI
ASEWGVKIGDEFSSLYSKAFGLCQPGQGAADARSVECVAPQGKHVSYLFSGDWSGPEGLI
PPDDILKSWKVSKIVWHAQGRE