Protein Info for HGI48_RS04155 in Dickeya dianthicola 67-19

Annotation: TetR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF00440: TetR_N" amino acids 10 to 51 (42 residues), 30.7 bits, see alignment 1.1e-11

Best Hits

KEGG orthology group: None (inferred from 62% identity to acd:AOLE_07615)

Predicted SEED Role

"Transcriptional regulator, TetR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RJ68 at UniProt or InterPro

Protein Sequence (187 amino acids)

>HGI48_RS04155 TetR family transcriptional regulator (Dickeya dianthicola 67-19)
MLPDTRQALIQSAEFMIRSRGYSAFSYADLEKMVGIRKASIHHHFPKKEDLGMIIVESNI
IKSENDLQKIESQFSSAYVRLCAFASIFRVAMQDGMLPLCGALAAEMTSLPSTMQNLTRQ
YFHLQLVWLEKIINEGISDGEIPDSGETCQKSFQILSLLEGSSFIRWALNNAPELDNNSI
KRIIGIP