Protein Info for HGI48_RS03375 in Dickeya dianthicola 67-19

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF00126: HTH_1" amino acids 3 to 62 (60 residues), 88.5 bits, see alignment E=2.3e-29 PF03466: LysR_substrate" amino acids 87 to 294 (208 residues), 140.6 bits, see alignment E=4.7e-45

Best Hits

KEGG orthology group: None (inferred from 95% identity to ddd:Dda3937_02312)

Predicted SEED Role

"Transcriptional regulator of alpha-acetolactate operon AlsR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R9U5 at UniProt or InterPro

Protein Sequence (297 amino acids)

>HGI48_RS03375 LysR family transcriptional regulator (Dickeya dianthicola 67-19)
MELRYLRYFVAVASTRHFTRAAESLGISQPPLSQQIQKLEREIGTPLFKRLTRGVEMTEA
GEALYQDANHILELTDSAVERVRSIARGESGAINVGFSCAVTFHPAVLTLLRRYRQHYPS
VRLQPREEHIHEILESLRNRTTDIAFVRLPGDIGEEFEGELLADEPMRLVLPENHPFSDQ
TRINLGQLRHEPLIIFPRELCPSLHDLIVRACYLSGYQPKINPLAPHITATISMVASGFG
VTFVPESLASIQTGNVTYHDTNTPHLTTQIAVIWRKHDRSATLLNMLQLVRDYLRHT