Protein Info for HGI48_RS03245 in Dickeya dianthicola 67-19

Annotation: 30S ribosome-binding factor RbfA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 TIGR00082: ribosome-binding factor A" amino acids 1 to 117 (117 residues), 145.9 bits, see alignment E=3.4e-47 PF02033: RBFA" amino acids 7 to 111 (105 residues), 121.6 bits, see alignment E=8.6e-40

Best Hits

Swiss-Prot: 86% identical to RBFA_PECAS: Ribosome-binding factor A (rbfA) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K02834, ribosome-binding factor A (inferred from 96% identity to ddc:Dd586_0601)

Predicted SEED Role

"Ribosome-binding factor A" in subsystem NusA-TFII Cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CAT5 at UniProt or InterPro

Protein Sequence (133 amino acids)

>HGI48_RS03245 30S ribosome-binding factor RbfA (Dickeya dianthicola 67-19)
MAKEFSRTQRVAQEMQKEIAIIIQREVKDPRVGMATVSGVEVSRDLAYAKVFVTFLNDNE
PEQVNAGVKALQDASGFIRMLLGKAMRLRVVPELTFSYDSSLVEGMRMSNLVTNVVKRDA
ERHTPAADDEQEG