Protein Info for HGI48_RS03080 in Dickeya dianthicola 67-19

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 transmembrane" amino acids 552 to 576 (25 residues), see Phobius details amino acids 590 to 611 (22 residues), see Phobius details amino acids 617 to 640 (24 residues), see Phobius details amino acids 643 to 665 (23 residues), see Phobius details amino acids 671 to 690 (20 residues), see Phobius details amino acids 850 to 869 (20 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 199 to 557 (359 residues), 206.5 bits, see alignment E=3e-65 PF10145: PhageMin_Tail" amino acids 243 to 450 (208 residues), 81.2 bits, see alignment E=4.9e-27

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R9T5 at UniProt or InterPro

Protein Sequence (946 amino acids)

>HGI48_RS03080 phage tail tape measure protein (Dickeya dianthicola 67-19)
MSSNSLRLQVVLDAVDKLTRPLRQAQAGSKGLSAAIKESQARLKALDTQAARIEGFRKAS
AQAAVVSNSLKGAREEAARLATQFAATERPTAQQARLLQQAKDRVNELQDKYNGLRVSVQ
RQREALSASGIDTKKLSDAQRQLRSEAQSVTDSLQRQQQALKQLGERQQKLNAIKSRYEK
TLDTRNKLAGTGGTMIATGVATAAPMIAPIKAYADSEDAATQLAGSMMGPGAKVSAEFEK
INQLAVSLGDRLPGTTADFQNMMTMLRRQGLSAQSILGGTGEAAAYLGVQLKMAPTEAAE
FAAKMQDATGTAEKDMMPLMDIIQKGFYAGVDPTNMLGGFAKIGSAMSIIKKDGIEAAKI
FAPLLVMADQASMEGGAAGNAYRKIFQAAMKTDKIKDVNDDLKDKKIKIKFDFTNGKGEF
GGLEKMYAQLGQLQKLNTETRLKVLKDIFGDDAETLQALNIMITKGLDGYRETQAKLEQQ
ASLRERVDAQLQTLGNKWDAATGSFTNAMASIGATVAPDLKQLIDGLGELAGKLNDFVKT
HPVLVSSLFKSAAGFAIAATAIGILFVAIASVMGPLSLLRMSLAMLGLKLPTLGGAVARV
VGLFGNVGSVFSGVGRLLLWLVASPFALLRTALMFVGGILGTLLSPVALFMAAIVAVGVA
IYQHWEPIKAFLGGVVDGFTAAAGPIVAAFEPLKPVFTWVGDKVQALWKWFTDLLEPVKW
SAAELDNAAAMGRKFGEFLADGLSKVMHPLDSLKSGVSWLLEKLGVVKTESDKLPSADVI
QKAQDAKAAATAPVNPANATPWGAPPVYSPFAGMYDSGGVIPAGQFGIVGENGPEIVNGP
ARITSRRHTAALAAAVLGAAASPVLAQPLHPFSLPASQYSNAGQARSAGLLAPTAPITVN
APIAIYTQPGQNATDIAREVARQLDERERRARAKSRSNYSDQGGIG