Protein Info for HGI48_RS03070 in Dickeya dianthicola 67-19

Annotation: phage tail assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 PF10109: Phage_TAC_7" amino acids 9 to 88 (80 residues), 57.3 bits, see alignment E=6.6e-20

Best Hits

Swiss-Prot: 50% identical to TAP_BPP2: Tail assembly protein E (E) from Escherichia phage P2

KEGG orthology group: None (inferred from 76% identity to pam:PANA_3136)

Predicted SEED Role

"Tail protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R9T0 at UniProt or InterPro

Protein Sequence (100 amino acids)

>HGI48_RS03070 phage tail assembly protein (Dickeya dianthicola 67-19)
MQELNTEKTVTLDSPLKRGDAAIDVITIRKPTSGALRGVRLQALMELDVNAVMVVLPRVT
APALTAAEVLELDPADLVALSVEVVTFLLPKSARQDSPAS