Protein Info for HGI48_RS03040 in Dickeya dianthicola 67-19

Annotation: baseplate assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF04865: Baseplate_J" amino acids 118 to 261 (144 residues), 95.8 bits, see alignment E=1.4e-31

Best Hits

Swiss-Prot: 65% identical to BPJ_BPP2: Baseplate protein J (J) from Escherichia phage P2

KEGG orthology group: None (inferred from 73% identity to kpn:KPN_04868)

Predicted SEED Role

"Baseplate assembly protein J"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R9Z5 at UniProt or InterPro

Protein Sequence (302 amino acids)

>HGI48_RS03040 baseplate assembly protein (Dickeya dianthicola 67-19)
MSVIDLSQLPAPDIVTVPDFETVLAARKAAYLALFPADERDAVVATLALESEPVVKLLQE
NAYREILLLQRINEAAQACMVAYALCNDLDQLAANYNVERLTVTPADETAVPPVDAVLES
DDDLRQRIPAAFEGLSVAGPTGAYAFHALSADGRVSDATAISPSPAAVTVTVLSRESDGT
APDDLLAAVAAALNDESVRPVADRVTVQSARVVPYTITARLYLYPGPEAEPIRQAAEAKL
TAYISAQRRLGRDIRRSALYAALHVEGVQRVELDSPSADVVLDDTQAAYCTGHQVTIGGN
DE