Protein Info for HGI48_RS01730 in Dickeya dianthicola 67-19

Annotation: L-rhamnose/proton symporter RhaT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 254 to 276 (23 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details PF06379: RhaT" amino acids 2 to 342 (341 residues), 479.7 bits, see alignment E=2.8e-148

Best Hits

Swiss-Prot: 61% identical to RHAT_MANSM: L-rhamnose-proton symporter (rhaT) from Mannheimia succiniciproducens (strain MBEL55E)

KEGG orthology group: K02856, L-rhamnose-H+ transport protein (inferred from 85% identity to tau:Tola_1041)

MetaCyc: 61% identical to rhamnose/lyxose:H+ symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-112; TRANS-RXN0-236

Predicted SEED Role

"L-rhamnose-proton symporter" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9R920 at UniProt or InterPro

Protein Sequence (342 amino acids)

>HGI48_RS01730 L-rhamnose/proton symporter RhaT (Dickeya dianthicola 67-19)
MSAIVSGIGWHLVGAASAASFYAPISKVRKWSWETTWAFAGLFSWILAPWLVTSMLIPDF
AAFYRVLDSKAFWGMFLFGAMWGVGNINYGLTMRYLGMSLGIGIAIGVTLVVGTLMPPIL
RGEFGHLITTSSGQITILGVFVALIGIGIVTWAGHLKEIALGTTTQEFKLKKGLFLAVMC
GIFSSGFAFGLEAADPIKQASLNLGIDPLYAMLPSYGIIMGGGAMVNLAYCFARLATRPE
LSLYNDLSQPARNLLINGLLAATGGIMWYLQFFFYAWGEASIPEHLSFVNWMLHMSGYVL
CGGIVGLLLAEWKGVGSRPVRILCLGMLVIVGAANMVGMGMA