Protein Info for HGI48_RS01540 in Dickeya dianthicola 67-19

Annotation: 30S ribosomal protein S9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF00380: Ribosomal_S9" amino acids 10 to 130 (121 residues), 172 bits, see alignment E=3.3e-55

Best Hits

Swiss-Prot: 98% identical to RS9_PECAS: 30S ribosomal protein S9 (rpsI) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K02996, small subunit ribosomal protein S9 (inferred from 97% identity to ecj:JW3199)

MetaCyc: 97% identical to 30S ribosomal subunit protein S9 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S9p (S16e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D9K7 at UniProt or InterPro

Protein Sequence (130 amino acids)

>HGI48_RS01540 30S ribosomal protein S9 (Dickeya dianthicola 67-19)
MAENQYYGTGRRKSSAARVFIKPGSGNIVINQRTLEQYFGRETARMVVRQPLELVDMVGK
LDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRK
ARRRPQFSKR