Protein Info for HER17_RS21425 in Pectobacterium carotovorum WPP14

Annotation: ribosome-dependent GTPase TypA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 PF00009: GTP_EFTU" amino acids 4 to 195 (192 residues), 200 bits, see alignment E=6.9e-63 TIGR00231: small GTP-binding protein domain" amino acids 5 to 134 (130 residues), 88.7 bits, see alignment E=3.5e-29 TIGR01394: GTP-binding protein TypA/BipA" amino acids 5 to 599 (595 residues), 958.5 bits, see alignment E=1.2e-292 PF01926: MMR_HSR1" amino acids 8 to 129 (122 residues), 26.8 bits, see alignment E=1.2e-09 PF03144: GTP_EFTU_D2" amino acids 219 to 289 (71 residues), 48 bits, see alignment E=3.5e-16 PF00679: EFG_C" amino acids 397 to 477 (81 residues), 76.8 bits, see alignment E=2.8e-25 PF21018: BipA_C" amino acids 485 to 593 (109 residues), 155.1 bits, see alignment E=1.3e-49

Best Hits

Swiss-Prot: 90% identical to TYPA_ECOLI: GTP-binding protein TypA/BipA (typA) from Escherichia coli (strain K12)

KEGG orthology group: K06207, GTP-binding protein (inferred from 99% identity to eca:ECA0030)

Predicted SEED Role

"GTP-binding protein TypA/BipA" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (607 amino acids)

>HER17_RS21425 ribosome-dependent GTPase TypA (Pectobacterium carotovorum WPP14)
MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFGERVEATERVMDSNDLEKERGITILAKN
TAINWKDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAMDGPMPQTRFVTKKAFANG
LKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIIYASALNGIAGLDHTDMA
EDMTPLYQAIVDHVSPPQVEMDAPFQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQVTIV
DSEGKTRNGKVGKVLTHLGLERIDATEAEAGDIIAITGLGELNISDTICDPQNVEALPAL
SVDEPTVTMFFNVNTSPFCGKEGKYVTSRQILERLNKELVHNVALRVDETEDADAFRVSG
RGELHLSVLIENMRREGFELAVSRPKVINRVIDGRNQEPFENVTLDIEEQHQGSVMQAMG
ERKGDVKDMIPDGKGRIRLDYLIPARGLIGFRTEFMTMTSGTGLLYSTFSHYDDVRPGEI
GQRQNGVLISNGQGKAVAFALFSLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG
KKLTNMRASGTDEATTLVPAIKMSLEQALEFIDDDELVEVTPQSIRIRKRHLTENDRKRA
SRGSKDV