Protein Info for HER17_RS20960 in Pectobacterium carotovorum WPP14

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 5 to 23 (19 residues), see Phobius details amino acids 29 to 46 (18 residues), see Phobius details amino acids 59 to 85 (27 residues), see Phobius details amino acids 151 to 176 (26 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 241 to 268 (28 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 315 to 343 (29 residues), see Phobius details PF01594: AI-2E_transport" amino acids 10 to 339 (330 residues), 174.5 bits, see alignment E=1.7e-55

Best Hits

KEGG orthology group: None (inferred from 94% identity to pct:PC1_4130)

Predicted SEED Role

"FIG00904974: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>HER17_RS20960 AI-2E family transporter (Pectobacterium carotovorum WPP14)
MNIKGLTKGFFILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGV
ASLLTVLIIFLLVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLPKWARHF
LAEHNLDNAAKIQQELSQVVLKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGA
YLVNLILESLPLSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLL
WGSLMAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVG
KDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDFI
EEGRLYASSVNPEEADAVVSQSADSKTTTEQTVESQGAENKKVE