Protein Info for HER17_RS20265 in Pectobacterium carotovorum WPP14

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF13175: AAA_15" amino acids 1 to 171 (171 residues), 32.8 bits, see alignment E=1.3e-11 amino acids 188 to 286 (99 residues), 39.6 bits, see alignment E=1e-13 PF13476: AAA_23" amino acids 7 to 105 (99 residues), 42.1 bits, see alignment E=3.2e-14 PF02463: SMC_N" amino acids 15 to 303 (289 residues), 62.1 bits, see alignment E=1e-20 PF13304: AAA_21" amino acids 25 to 286 (262 residues), 78.6 bits, see alignment E=1.7e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>HER17_RS20265 AAA family ATPase (Pectobacterium carotovorum WPP14)
MKIIFTEINHIGGIKNLTLNFTESMNIICGPNGIGKSTILDSIGFMFSRSGSSIKKNIRS
NDDGKINLQIKNAEGQQELTATVNVFEPFVNNNNYQSQDIRYLIRFNTERHFRYSRLEHI
GTDPKRAVHDVSMQNDSGVLLHDLKGWLGKRYLLEDSKKNFFSANSKKNLDLALSSINVL
NTEYTFSHIDGRNFDIFVTTPNGVIWYEYLSSGFKSCLAIIIGIIKEIELRFAAEDFYAA
EFDGIILIDEIEMHLHPEWQGRITEVLTEMFPLAQFIVTTHSPHVVQNGKPDQIIALEQA
DDGETRVRSQPGKESGYTGWTVDEVLRDVMGMESTLSRNLQQKLSEFYRFVDSEDHAKAS
ALYEYLDIILHPKNVLRKSLTMSLDMIQDAGEEA