Protein Info for HER17_RS20090 in Pectobacterium carotovorum WPP14

Annotation: metalloprotease PmbA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 PF01523: PmbA_TldD_1st" amino acids 32 to 96 (65 residues), 51.2 bits, see alignment E=1.8e-17 PF19290: PmbA_TldD_2nd" amino acids 124 to 230 (107 residues), 72.2 bits, see alignment E=7.8e-24 PF19289: PmbA_TldD_3rd" amino acids 238 to 445 (208 residues), 250.3 bits, see alignment E=1.8e-78

Best Hits

Swiss-Prot: 83% identical to PMBA_ECO57: Metalloprotease PmbA (pmbA) from Escherichia coli O157:H7

KEGG orthology group: K03592, PmbA protein (inferred from 98% identity to pwa:Pecwa_0275)

MetaCyc: 83% identical to metalloprotease subunit TldE (Escherichia coli)
3.4.24.-

Predicted SEED Role

"TldE protein, part of TldE/TldD proteolytic complex"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>HER17_RS20090 metalloprotease PmbA (Pectobacterium carotovorum WPP14)
MTITTQVAEQRKALELAVAQALELARAGSDAAEVAVSKTTGISVSTRYGEVENVEFNSDG
ALGITVYHQQRKGSASSTDLSPDAIARTVQAALDIARYTSVDPFAGPADRDLLAFDAPDL
DLFHPTELDADRGIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGLLKSYCS
SRHSMSSCVIAEVNGDMERDYAYTVGRALDDLLSPEWVGEECARRTLSRLSPRKLPTMQA
PVMFSAEVATGLFGHLVGAISGGSVYRKSTFLLDKLGQQILPEWLTIEEQPHLLRGLAST
PFDSEGVRTQAREIVKAGVLQTWLMTSYSARKLGMQSTGHAGGIHNWRIAGQGLDFNGML
KQMGKGLLVTELMGQGVSGVTGDYSRGASGFWVENGEIQYPVSEITIAGNLKDMLRNIVT
VGNDVETRSNIQCGSVLLPSMKIAGE