Protein Info for HER17_RS19880 in Pectobacterium carotovorum WPP14

Annotation: divisome-associated lipoprotein YraP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF04972: BON" amino acids 45 to 112 (68 residues), 52 bits, see alignment E=3.5e-18 amino acids 124 to 188 (65 residues), 63.2 bits, see alignment E=1.1e-21

Best Hits

Swiss-Prot: 72% identical to YRAP_ECO57: Uncharacterized protein YraP (yraP) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 98% identity to pwa:Pecwa_0311)

Predicted SEED Role

"21 kDa hemolysin precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>HER17_RS19880 divisome-associated lipoprotein YraP (Pectobacterium carotovorum WPP14)
MRISSAFAVLSIALLLQGCVGVVAVGSAVATKTATDPRTVGTQVDDGTLEVRVTNAISKD
EQLKKEARIVATAYQGKVLLTGQAPSTEMASRAKQIALGVEGAAEVYNEIRQGTPVSMGT
ASMDTWITTKVRSQILASDTVKSSNVKVTTENGEVFLLGLVTQREGTSAAEIASKVGGVK
HVTTAFTYLQ