Protein Info for HER17_RS19720 in Pectobacterium carotovorum WPP14

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 PF00392: GntR" amino acids 21 to 83 (63 residues), 48.2 bits, see alignment E=1.7e-16 PF13545: HTH_Crp_2" amino acids 47 to 77 (31 residues), 28.7 bits, see alignment 2.6e-10 PF00325: Crp" amino acids 49 to 73 (25 residues), 25.6 bits, see alignment (E = 2e-09) PF07702: UTRA" amino acids 105 to 239 (135 residues), 108.9 bits, see alignment E=4.7e-35

Best Hits

Swiss-Prot: 32% identical to YEGW_ECO57: Uncharacterized HTH-type transcriptional regulator YegW (yegW) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 91% identity to eca:ECA0348)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>HER17_RS19720 GntR family transcriptional regulator (Pectobacterium carotovorum WPP14)
MRELLLWLRDQLAGAPSAPRYMQLALLLESEIGRRKTLSGQFLPAERLIAQQLGLSRVTV
SRSLSLLEEKGLIVRQQGVGTRVAQRLNYALSAEDEGFTALILKQGGVAGSLWLEKAIQV
PPAAIAAKMSLPEGEAVTYLRRVRLSNGEPVSLETTWIPQKFLPDPEALEQSLYQYWVTR
GITPDKKRYRFKAIACKADIAALLGIAAEAPALYCQLHVYNERGELLEYSEAHCRSDVYE
IQFAD