Protein Info for HER17_RS19485 in Pectobacterium carotovorum WPP14

Annotation: DUF898 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 140 to 166 (27 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 224 to 252 (29 residues), see Phobius details amino acids 272 to 296 (25 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details PF05987: DUF898" amino acids 11 to 385 (375 residues), 343.8 bits, see alignment E=5.3e-107

Best Hits

KEGG orthology group: None (inferred from 92% identity to eca:ECA0387)

Predicted SEED Role

"Inner membrane protein YjgN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>HER17_RS19485 DUF898 domain-containing protein (Pectobacterium carotovorum WPP14)
MTINTSENSAQHRVQFHGKAGEYFAIWLVNALLTVITLGIYSAWATVRRRRYFYGNTEIN
GDRFDYHAQPIQILKGRLLVIAGIVLFYIVMMMSPALGTIIALAFAALIPIIVIRNWRYD
AIMSSYRGIRFNYHCQTGRAYWVLLLCPILLLLAFYAVLAVALLIGSQSDSPILIGFIVL
AVAIPGFAAVNGIMKMMQLDFYVNNLFFGKTAFKAELAKAAFIKFALISLLIFVPFLIAS
LSFMSSFFFTLFQTIMMGGGNEDLVLMMLLSNVFNMIMMFVVALLGVLVSSSYLVVAQRN
YLFNQTSLNGGVKLHSSMQTLSYMGLLITNSLITIFSLGWAAPVAEIRHARYIANATAVE
GDLALLHVQAHQDTANSALAEEAVQALDLGVGL