Protein Info for HER17_RS19340 in Pectobacterium carotovorum WPP14

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 PF07728: AAA_5" amino acids 394 to 526 (133 residues), 40.1 bits, see alignment E=3.7e-14

Best Hits

KEGG orthology group: None (inferred from 67% identity to ecx:EcHS_A4532)

Predicted SEED Role

"FIG00638448: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (695 amino acids)

>HER17_RS19340 AAA family ATPase (Pectobacterium carotovorum WPP14)
MDIIAQVEKGEWSLDAFIEYLVKYSQEKYPKWKDNYRDLVIETQAATTFTTPETDDLLKR
LWYVRDNGIANIRQGVPSLAEFQQSIPLLRELTELIRSQPDESTYHSITEKMLQAKQDGF
FRRMYWALRNRVFAAFSPENYTTTVDYDYFNYAAWFIDQHFSLGLSLSGSWLENNRELKQ
KLAARVKNIDHYDLNMTIWALYELLRNRDNQNAQDPLDIDVVNTREKSSPRDVSLLLRSP
SNQIFFGPPGTGKTYTLQKKMAEYTAQATSEDYDVWLDSRLATLNWMQVTALALLDLNKQ
AKVRQLTEHAWFQRKALLNGRSSNLSQTAWATLQAYTVPESTTVDYKNRREPAIFDKTAS
SEWFLVESQLEQIEDLVTFYDGLKRGPEQGEKIQRFSTVTFHQSYGYEEFIQGIRARSDG
NGNVSYSTEQGIFLQLCDRAKADPEHRYAIFIDEINRGNISKIFGELIALIETDKRAGMK
NALSLQLAYSESGDLFSVPANVDIIGAMNTADRSLALMDTALRRRFEFIEMMPDLSLLSG
VKVKGIELESLLEKLNSRIEALYDREHTLGHAFFIPVKTALEEKGEESAFKVLQAVFKKK
VIPLLQEYFFDDWNRIRLVLADNQKKKDSLQFIIEKVDELDELFGDDHGLRRHNQKSTAY
ELKDFELGVWSEPSAYRAIYEPKVDYISDSDERNG