Protein Info for HER17_RS18980 in Pectobacterium carotovorum WPP14

Annotation: putative Ig domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2756 PF14252: DUF4347" amino acids 107 to 268 (162 residues), 179 bits, see alignment 2.2e-56 PF17963: Big_9" amino acids 1442 to 1538 (97 residues), 25.3 bits, see alignment (E = 7.2e-09) amino acids 1544 to 1638 (95 residues), 37.2 bits, see alignment (E = 1.4e-12) amino acids 1644 to 1738 (95 residues), 36.9 bits, see alignment (E = 1.8e-12) amino acids 1744 to 1838 (95 residues), 36.4 bits, see alignment (E = 2.4e-12) amino acids 1844 to 1938 (95 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 1947 to 2038 (92 residues), 32.5 bits, see alignment (E = 3.9e-11) amino acids 2044 to 2138 (95 residues), 31.2 bits, see alignment (E = 1e-10) amino acids 2144 to 2238 (95 residues), 33.7 bits, see alignment (E = 1.8e-11) PF05345: He_PIG" amino acids 1457 to 1551 (95 residues), 72.2 bits, see alignment (E = 1.4e-23) amino acids 1556 to 1651 (96 residues), 78 bits, see alignment (E = 2.1e-25) amino acids 1656 to 1751 (96 residues), 79 bits, see alignment (E = 1.1e-25) amino acids 1756 to 1851 (96 residues), 74.1 bits, see alignment (E = 3.7e-24) amino acids 1856 to 1951 (96 residues), 68.6 bits, see alignment (E = 1.9e-22) amino acids 1956 to 2051 (96 residues), 73 bits, see alignment (E = 8e-24) amino acids 2057 to 2151 (95 residues), 72.9 bits, see alignment (E = 8.3e-24) amino acids 2157 to 2251 (95 residues), 69.2 bits, see alignment (E = 1.2e-22) amino acids 2256 to 2351 (96 residues), 70.5 bits, see alignment (E = 4.8e-23) amino acids 2356 to 2451 (96 residues), 72.5 bits, see alignment (E = 1.1e-23) amino acids 2456 to 2551 (96 residues), 73.4 bits, see alignment (E = 5.8e-24) PF17892: Cadherin_5" amino acids 1553 to 1651 (99 residues), 27.2 bits, see alignment (E = 9.7e-10) amino acids 1653 to 1751 (99 residues), 26.7 bits, see alignment (E = 1.5e-09) amino acids 1753 to 1851 (99 residues), 26.7 bits, see alignment (E = 1.4e-09) PF17803: Cadherin_4" amino acids 1645 to 1717 (73 residues), 26.4 bits, see alignment (E = 2.9e-09)

Best Hits

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2756 amino acids)

>HER17_RS18980 putative Ig domain-containing protein (Pectobacterium carotovorum WPP14)
MLWRQLFSKKSDHPTDHIEQDYSTPLGCVLESRVLFDGAIAATATQAETGNSSDATASSH
PAQTANHSAETASENSTSSDQNSATHDITTDVVVQAVAGETIRKEAVFIDTALTDYQTLV
NSVPTGVDVFLLDSSKDGLSQLAAWAETHKGYDAIHILSHGNEGQVRLGNLTLDSATAEA
RSADLAKLGTALTQDGDLLLYGCDIAQDTGKSFVSLLSQLTQADIAASDDLTGAIAKGGN
WQLETTVGSIETKNAALGEITREYNNLLASPTLGTNTFSQFSGSSTFVSSQPGLQSYDDI
NNGFTYIASSTDRVTLQTVAISGNQVLNTIVAPGGDLNYFAVKSTDGSEFKLSSIDLRGL
GSYASTFTITGYKDGSAVAGATQTITLTTAFQTATLSNAFQNIDEVRLTTATMGSGTVTW
DNIVTAALVASTDNVPSVTATGANPTYTENGTAVGVFTGVSVDTHDAGQTFTSAAFTVSN
VAGSTEYLTLHGINVALSNGNSVSLGSGYGSASVSLSGGIATVSITGATLSNSDMGSLLS
GMTYGNSSDNPGNATRTVTLTQLTDSGASNNTIAPNISSAITVVPVNDAPTDITLSATTF
AQSLGGNGTVATLTATDVDSSVFTYSLVSGSGSTDNALFTISGNTLKAVNATGMAAGTYS
VRLQVSDGAATYDKVVSLVVVDDIAPTFDQSPSVSNATAGGFNLSGSLTETGNVYYVVVA
DGASAPTATQVIAGQTATGSSATASGSQVLGSSPFNFSFTLAGLAASTAYDVYVVARDSA
GNNTVSVVKVDATTTSAGTAPTLSATGSNPVFIGGMAGSIDLFSGVSANTNDSGQTFSSL
TLTVSNATDSGEFINVGGNNISLSANNSGTLAGIGSYSVTRSGNTVTLQLSGMSASNSEI
AGLVDGLRYGNTSASATAATRAVTLSAVSDNGSSNNSTALNLTSNVNVLTSNSALFVTAG
DDIGDNATFGSSVQEDANDGGGLSLREALYWANNTAGIDRIVFQTDVTLASSLLSPTDSM
LIDGQSFTLNGGGYSGFQIVTGSITLAIQNLTLTNFTTDYSTDTGGVFGISYSASDVNFR
LYNVDISGNRDTMFGNGVFDLFNIAPGSYNFDFDRVNIHDNLMIGNLNEGVIRLFVSRTQ
QTVSLSITNSAITNNTGINPAGSTFGISGLWLTGNQGNPTSTHISLINTTITGQDNGIVF
EFINNALSWVASVRNSIITGTSQDIVAYTPTGQPAGGSYTLYGGNNILSGSVNQVSSSDP
RLAATASNAINQGNRFYITGETDVRGLDRVRQGAVDIGAYESQFAAGTAPQVDLNGSTTG
NNYSTTVPAASAAAGISVTDALATLSQTDGDSRLWTLTLNLAGTTDGSSESLSLSQQALL
AAHAAGINVTGNGSQTLTLTGGATQEAFQIALRAIVYANVAATPTAGNRTVSVTANDDAS
STATSTLTLTASNNASPVVSGTIAAQSIAQGGNLNVTVPAGTFTDPDGDTLTLSATLADG
TALPAWLSFNPTTGTFSGTPANGDVGSLTIKVTATDGSNASVSTTFGLTVTNVNDAPVVA
TPIPAQSVAQDGSLSFTVPAGTFTDPDGDTLTLSATLADGTALPAWLSFNPATGTFSGTP
ANGDVGSLTIKVTATDGSSASVSTTFGLTVTNVNDAPVVATPIPAQSVAQDGSLSFTVPA
GTFTDPDGDTLTLSATLADGTALPAWLSFNPATGTFSGTPANGDVGSLTIKVTATDGSNA
SVSTTFGLTVTNVNDAPVVSGTIAAQSIAQGGSLSVTVPAGTFTDPDGDTLTLSATLADG
TALPAWLSFNPATGTFSGTPANGDVGSLTIKVTATDGSSASVSTTFGLTVTNVNDAPVVS
GTIAAQSIAQGGSLNVTVPAGTFTDPDGDTLTLSATLADGTALPVWLSFNPATGTFSGTP
ANGDVGSLTIKITATDGSNASVSTAFGLTVTNVNDAPVVSGTIPPQNIAQGGNLNVTIPA
GTFTDPDGDTLTLSATLADGTTLPSWLSFNPATGTFSGTPANGDVGSLTIKVTATDGSNA
SVSTTFGLTVTNVNDAPVVSGTIPAQNIAQGGSLNITIPAGTFTDPDGDTLTLSATLADG
TALPSWLSFNPATGTFSGTPGNSDVGSLTIKITATDGSNASVSTTFGLTVTNVNDAPVVS
GTIPAQNIAQGGSLNITIPAGTFTDPDGDTLTLSATLADGTALPVWLSFNPATGTFSGTP
ANGDVGNLTIKVTATDGSNASVSTTFGLSVTNVNDAPVVSTPIPPQNVAQGGGFNFTVPD
GTFSDPDGDTLTLSATLANGSPLPSWLRFDPTIGTFSGTPGNADVGTLVIRVTATDGSNT
SISTSFGLTVTNANDAPVVATPIPPQNVTQGGGFNFTVPDGTFSDPDGDTLTLSATLANG
SPLPSWLRFDPTIGTFSGTPGNADVGTLVIRVTATDGSNTSISTSFGLTVTNANDAPVVA
TPIPPQNVTQGGGFNFTVPDSTFSDPDGDTLTLSATLANGSPLPSWLRFDPTIGTFSGTP
GNADVGTLVIRVTATDGSNTSISTSFGLTVTSSFVSSDPEFKANDGLGRTPSASDTRQLF
TQDATIALPALDGLIANPSLGSFTVGNDGAPQSVMSAIFATGRQNTEGGTLPTSQVAGTF
GRGAASGIGINFDSTLGSFPSFSKDPALGGTSSLASTFSGIYLPSLTPMEVFSGGSWKDI
PLNGASNAMNSTDDGTGRSVAFTPSLHQQLQQIGDSKQQRLAAIEQALQESGQQQG