Protein Info for HER17_RS17605 in Pectobacterium carotovorum WPP14

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 60 to 86 (27 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 198 to 222 (25 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 298 to 325 (28 residues), see Phobius details PF01594: AI-2E_transport" amino acids 181 to 328 (148 residues), 44.1 bits, see alignment E=8.1e-16

Best Hits

KEGG orthology group: None (inferred from 97% identity to eca:ECA0815)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>HER17_RS17605 AI-2E family transporter (Pectobacterium carotovorum WPP14)
MQLLNLKQARLLSFFFIMGGLLILLPLRLLACFIAGFLVYEIVNLLTPYFQRVISGKRAR
WIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIGYILNDIQQQIVHYLPGYLP
VSIEELQHELLQWVQAHIVMLQNMGKSFLHGFVTMLIGMVLGAIVSLYNVDKDTEKPLLK
AELLRRVSLLSASFRNIVFAQVKISAVNTVLSAIFILGALPLCGIHLPFAKTLVVLTFVF
GLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKLEYFLNAQIVGTRIKAHAWEI
LLAMLVFEAAFGLSGVIAAPIYYAYLKSELKEASLI