Protein Info for HER17_RS17550 in Pectobacterium carotovorum WPP14

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 40 to 65 (26 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 205 (191 residues), 117.4 bits, see alignment E=2.9e-38

Best Hits

Swiss-Prot: 34% identical to Y136_VIBCH: Uncharacterized membrane protein VC_0136 (VC_0136) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: None (inferred from 97% identity to pct:PC1_0704)

Predicted SEED Role

"FIG00905729: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>HER17_RS17550 LysE family transporter (Pectobacterium carotovorum WPP14)
MSLHLWLAYTGIIIALIAIPGPSALISMSHGLRYGASRATATVLGGVSAAMILMSCSALG
LGAILAASTTAFTVLKIIGAVYLIWLGIASWRSKDMSTTEQDVQEASAPGWFPLFRKGFL
VGISNPKDLLFFAALFPNFIDTSAPHAMQLIILAVTWAVFDFSIMFIYACTGRRLSGLFS
SPRRIKMFNRSTGGIFILAGTTLAASTR