Protein Info for HER17_RS17110 in Pectobacterium carotovorum WPP14

Annotation: multidrug/biocide efflux PACE transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details PF05232: BTP" amino acids 7 to 69 (63 residues), 90.3 bits, see alignment E=3.1e-30 amino acids 75 to 138 (64 residues), 83.2 bits, see alignment E=5.3e-28

Best Hits

KEGG orthology group: None (inferred from 96% identity to pct:PC1_0789)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>HER17_RS17110 multidrug/biocide efflux PACE transporter (Pectobacterium carotovorum WPP14)
MQNKTSKTLRERVYHAVGFELIALTICAPAGAWLLNKPLFDMGALAIMLSSVAMIWNMIY
NSIFDRLWPADRVKRRLPIRIAHALGFEGGFILIGLPLAAWMLNVTLWQALMVEIGFFLF
FLPYTVVYNWAYDTLRERIVNRRHVQQVSASSRLR