Protein Info for HER17_RS16535 in Pectobacterium carotovorum WPP14

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1132 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 2 to 1097 (1096 residues), 1335.9 bits, see alignment E=0 PF04257: Exonuc_V_gamma" amino acids 2 to 349 (348 residues), 382.9 bits, see alignment E=1.2e-118 PF17946: RecC_C" amino acids 838 to 1059 (222 residues), 219.1 bits, see alignment E=5.4e-69

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 96% identity to eca:ECA0993)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1132 amino acids)

>HER17_RS16535 exodeoxyribonuclease V subunit gamma (Pectobacterium carotovorum WPP14)
MFRIYHSNQLDILKRLMVELIKRQPLADPFQQEVILVQSPGMAQWLQIELAGHFGIAANI
QFPLPGVFLWNMCRYVLPDIPKESAFSKDAMTWKLMHLLPDLLAQPDFAALNHYLQDDDN
QRKLHQLAGRVADLFDQYLIYRPEWIKAWQEGKQVDDLGGNQLWQSALWRALVDYTRELA
QPEWHHAILYQRFITALEQAKSCPKGLPPRVFICGISALPPIYLQALNALAQHIDVHLLF
TNPCRHYWSDIQDYKFLAKLKARHRRLHRFDGEQPDETRPLFRDPSQAETLFNDDGKQSI
NNPLLASWGKLGRDNLYLLAELDSVQEIDAFVESDGENLLQTLQRDILELEDHAVVAVSH
ETQNTSMQKRLLALDDRSIDFHACHSPQREVEVLHDRLLAMMADDPELMPRDVIVMMADI
DSYTPFIQAVFGNAPDNRYLPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLE
VPALAARFGIQEEGLRRLRLWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGY
AMDSQVGDWQGVLPYDESSGLIAELAGQLAELLMQIHHWRQRLSQPRVLVDWLPLCRELI
ETFFDADSETEAALALVEKQWQYVIGMGTMAHYPQQVPISRLRDELSRRLDQERLSQRFL
AGSINFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPLGFDLMGRKIKRGDRSRRDDDRYL
FLEALLSAQHKLYISYIGRSIQDNTRRYPSVLVSELTEYIAQSYVLPGDEALDIDSSAER
VVKHLCREHSRMPFDANNFLSSPQPLSFAAEWLAAANQKGEAQPDFDREALSERASDRDV
SLDDLKRFYRHPVRAFFQLRLGVSFMLHSDELLDEEPFVVDSLNRYQLNSELLNTLINEG
DTEKLYRRARAAGELPYGAFGEIYWQEQQQEMAQLAARVRDELTPSLSVSREVDILLDGV
RVSGWLNQVQPDGLLRWRPGTLSMKDGITLWLEHLAYCATGGQGESRLYGREDTAWRFAA
LSEAQAREHLAVMLDGYRQGMSKPLLLLNKAGSAWLAECYDRESDSLRADEDAQNKARTR
LLQAWQGNMGMRGEGEDYYLQRIIRELDEKRMNEVIEAAQIWLLPPFRFNLA