Protein Info for HER17_RS15515 in Pectobacterium carotovorum WPP14

Annotation: nicotinamide mononucleotide deamidase-related protein YfaY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 TIGR00200: competence/damage-inducible protein CinA N-terminal domain" amino acids 1 to 395 (395 residues), 437.1 bits, see alignment E=5.8e-135 TIGR00177: molybdenum cofactor synthesis domain" amino acids 2 to 165 (164 residues), 101.1 bits, see alignment E=5.3e-33 PF00994: MoCF_biosynth" amino acids 6 to 170 (165 residues), 114.5 bits, see alignment E=1.7e-37

Best Hits

KEGG orthology group: K03742, competence/damage-inducible protein CinA (inferred from 97% identity to pct:PC1_1119)

Predicted SEED Role

"Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>HER17_RS15515 nicotinamide mononucleotide deamidase-related protein YfaY (Pectobacterium carotovorum WPP14)
MLRVEMLCTGDEVLHGQIIDTNAAWLADYLFQQGLPMTSRMTVGDDLDALVTAITQRSQI
ADILIVNGGLGPTSDDLSALAAATAAGEGLVERVEWLARMEAFFAERGRVMAPSNRKQAQ
IPASAEMVDNPVGTACGFALQLNKCLMFFTPGVPSEFKVMVDQQIMPRLRERFAVADAPL
CLRLTTFGRSESDLASQLDGMALPPGVVLGYRSSMPIIELKLTGPAAQQENMEQLWETVR
TVAGENTIFEGTEGLPAQLARRLAERDMTLAVSEHFTAGLLNWQLQSANVPLVGGELLAN
VEDVSLSGLADYARHLAERQGASLALVVGNRNDAELSLALHTPEGSFAQTIQFNVQRYSL
KTHQEVVAMLAMNMLRRWLNGWSVYGGHGWITVLGTL