Protein Info for HER17_RS15430 in Pectobacterium carotovorum WPP14

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF02463: SMC_N" amino acids 10 to 317 (308 residues), 43 bits, see alignment E=7.7e-15 PF13304: AAA_21" amino acids 194 to 314 (121 residues), 63 bits, see alignment E=9.7e-21

Best Hits

KEGG orthology group: None (inferred from 71% identity to xne:XNC1_3543)

Predicted SEED Role

"ABC transport protein, ATP-binding subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>HER17_RS15430 AAA family ATPase (Pectobacterium carotovorum WPP14)
MKTVAKSDHLNRIVIKGYKSIADCDVEMRTLNILIGANGAGKSNFISFFRLITNLLAQRL
QLFVGKNGGPDALLHFGRKKSPSLAGEVFFTDTSYHFSLEPTNDNRMMFESEDILQARST
TITHGHFESQHKTFCSHNGTNKLDDVLPLLETVRVYHLNDTSESARVKQIHRINDNDYLR
EDGANLAAFLFRLQKNHTTHYQRIVKTIQMVAPFFGDFYLRATPDNPDSIQLEWVEKSQD
IPFKAHELSDGTLRFILLATVLLQPEIYMPSAIIMDEPELGLHPYAISVLAALIRSASEQ
HQLIVSTQSVELVNEFEAEDLIVVDKHLGASTFKRLDQNTLQDWLEDYSLGELWKKNILG
GRPQR