Protein Info for HER17_RS14910 in Pectobacterium carotovorum WPP14

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13181: TPR_8" amino acids 300 to 329 (30 residues), 12.2 bits, see alignment (E = 6.2e-05) amino acids 339 to 365 (27 residues), 15.7 bits, see alignment (E = 4.9e-06) PF13424: TPR_12" amino acids 300 to 365 (66 residues), 31.2 bits, see alignment E=7.3e-11 PF13176: TPR_7" amino acids 301 to 329 (29 residues), 14.5 bits, see alignment (E = 1.2e-05) PF13374: TPR_10" amino acids 301 to 327 (27 residues), 14.8 bits, see alignment (E = 8.3e-06)

Best Hits

KEGG orthology group: None (inferred from 93% identity to pwa:Pecwa_3096)

Predicted SEED Role

"Hemolysin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>HER17_RS14910 hypothetical protein (Pectobacterium carotovorum WPP14)
MKALVLALSTFTCAVSAQSINIEVLSATVKDKKIDDATVILQKNGAQSVTARSDVAGRAA
LNAPFDVDQDSLLIIKKAGYSDLVVKCPCDGMTYAISPVMKSLDGMRIVLTWGEKPDDLD
SHLIYPGNHIYFSHKNGRDANLDVDDTDSFGPETITIDKKRLGESYIYAVHDYSNSEKAN
SLALSASRAKVFVYVGSSQVRSYSVPLNKTGNIWTVFRLNPNGDFEDINAVGEADFTKVK
DSDALPMVLNSAQTAASVTGNAALAKNLNRDGEAAYGRGELEQATTLFLAAIDQDSAFGQ
AYSNLGLTYQKRGNIAEAIWANRKAIALANGSNAATTRASSYYNIAKIYENAGQFSDALQ
HYELARSEKSNTVYDNAIERMKAKK