Protein Info for HER17_RS14865 in Pectobacterium carotovorum WPP14

Annotation: Tol-Pal system beta propeller repeat protein TolB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR02800: Tol-Pal system beta propeller repeat protein TolB" amino acids 14 to 427 (414 residues), 517.3 bits, see alignment E=1.5e-159 PF04052: TolB_N" amino acids 23 to 122 (100 residues), 109.2 bits, see alignment E=2.3e-35 PF07676: PD40" amino acids 199 to 223 (25 residues), 20.2 bits, see alignment (E = 9.3e-08) amino acids 237 to 272 (36 residues), 38.6 bits, see alignment 1.6e-13 amino acids 282 to 315 (34 residues), 41.3 bits, see alignment 2.2e-14 amino acids 370 to 398 (29 residues), 15 bits, see alignment (E = 3.9e-06) PF00930: DPPIV_N" amino acids 250 to 351 (102 residues), 27.5 bits, see alignment E=2.6e-10

Best Hits

Swiss-Prot: 98% identical to TOLB_PECAS: Tol-Pal system protein TolB (tolB) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K03641, TolB protein (inferred from 98% identity to pct:PC1_1249)

MetaCyc: 85% identical to Tol-Pal system periplasmic protein TolB (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>HER17_RS14865 Tol-Pal system beta propeller repeat protein TolB (Pectobacterium carotovorum WPP14)
MKQVLKVALSFLMLWTAVAHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDVGGIVGA
DLRNSGKFNPIDANRMPQQPATASEVTPAAWTALGIDAVVVGQVQPSADGSYLVSYQLVD
TSGNPGSVLAQNQFKVTKQWLRYAAHTASDEVFEKLSGIKGAFRTRIAYVVQTNGGQFPY
ELRVADYDGYNQFVVHRSPQPLMSPAWSADGSKLAYVTFESGRSALVIQTLANGAIRQVA
SFPRHNGAPSFSPDGSKLAFALSKSGSLNLYVMNLGSGQISQVTDGRSNNTEPTWFPDSQ
TLAYTSDQAGRPQVYKVNANGGAPQRLTWEGSQNQDSDVSADGKFLVTVSSNGGAQHISK
LDLVTGAVQVLTDTFLDETPSIAPNGTMVIYSSKQGLGSVLQLVSTDGRFKARLPATDGQ
VKFPAWSPYL