Protein Info for HER17_RS14710 in Pectobacterium carotovorum WPP14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 111 to 134 (24 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details amino acids 310 to 334 (25 residues), see Phobius details amino acids 346 to 369 (24 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details PF12832: MFS_1_like" amino acids 21 to 371 (351 residues), 130.1 bits, see alignment E=1.7e-41 PF03825: Nuc_H_symport" amino acids 21 to 411 (391 residues), 340.5 bits, see alignment E=2.2e-105 PF07690: MFS_1" amino acids 252 to 408 (157 residues), 40.5 bits, see alignment E=2.6e-14

Best Hits

KEGG orthology group: None (inferred from 99% identity to pwa:Pecwa_3058)

Predicted SEED Role

"Nucleoside permease NupG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>HER17_RS14710 MFS transporter (Pectobacterium carotovorum WPP14)
MVSSSENTATKSLQPAFVVPRLSLMMFLEFFIWGSWSVTLGLVMTQYNLAAMIGDAFSAG
PIASILSPFVLGMVVDRFFPSQKVMALLHLIGAVILWFVPTALINEDGSQLLILLFAYTL
CFMPTLALTNNIAFHNLTNSEKSFPVVRVFGTIGWIVAGVCIGTAGISASVNIFYVAAAC
SAILAAYSLTLPHTPAPAKGLPLAVRDLFCADAFALLKKGHFLVFAICAMLISIPLGTYY
AYTASFLSNAGISDVSTAMSFGQMSEIVFMLIIPLLFRKLGVKYMLFIGMLAWFVRYALF
AMGVNEETRWLLYIGILLHGICYDFFFVIGFIYTDRIAGEKIKGQAQSLVVLFTYGIGML
LGSQVSGAIYNRLFDNGTLNAPEIWATFWWIPAVAAAIIAVIFLFSFKYKEEQA