Protein Info for HER17_RS13140 in Pectobacterium carotovorum WPP14

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 transmembrane" amino acids 430 to 449 (20 residues), see Phobius details amino acids 469 to 487 (19 residues), see Phobius details amino acids 540 to 563 (24 residues), see Phobius details amino acids 570 to 591 (22 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 377 to 482 (106 residues), 31.7 bits, see alignment E=4.1e-12

Best Hits

KEGG orthology group: None (inferred from 64% identity to pwa:Pecwa_2893)

Predicted SEED Role

"FIG00904470: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>HER17_RS13140 phage tail tape measure protein (Pectobacterium carotovorum WPP14)
MFLNGVMLGRSFGTTLDDTKKSIQSLSDSLKQAQERQRQFNQSLERFGTVSSQAISRIAQ
ATSRLNKSLHELETNQERLRRNKPSKETPSKETSGKSRGELADDFKTKREQFGFVMKPVV
ASVTHYASFEAQLRGISIAHDISSEQEKLMGQRLRQSSQQVNQTPEALLSSAGKLLDNGM
SQQQATDLAAVLGKTSTASGAALTDLTALSVTLDNVFNLKGAEVQQESLSRMLAGTKQGF
SAALMSQYVPALASGFTAMGATGNQALSQLVSSLSATKGADTEANTAARLGSFMNAVGRT
DIADSYGKAGLNYNALLKSHMKDGYSQYDAAVLIGNQLIDSKGSQFQKRWDMAAGNVDAQ
QSLMQRYGLEEVFRTPEAVNHAMSMKQNWQSYQANQQVMNSPAATQTLDLDFARQNDTLT
ARWNRMTTSLLNIALNVGEALMPVLVSLSDALLPILDQLVTWTAANPELVRGIVMAVAGF
FAFRMALSGAKLGMDILLPSLQSVWKGIQQGWQWLKGLNLKGLWPSIRSALSGLGSRAWA
LLGRIFSIVWRRVAMMAIGAVMTMMTTPVGWVVAAVVGVLAALAGIVALVYKYRDQISSF
FSHHWSDISQKHKAFWADLKNGASGGVAGVLGVLVDRSPLGTWYSTWLKGANELKVKLPE
SLSGLASLLIDKFVSELANEFPKLQIVSNKIGELIPDSVKDFLGIGSKKVSVEASGQPVA
AGAVATPVLKPTSVSALSLEPTPQQRVALTPTVGGAKGKLATAAPSERVQVAFSPTIYLN
GQKAAPTPEMTKTLTLSMNELENMLNKLLTQRERRGYA