Protein Info for HER17_RS13040 in Pectobacterium carotovorum WPP14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 331 to 352 (22 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 323 (295 residues), 100.2 bits, see alignment E=5.9e-33 amino acids 235 to 388 (154 residues), 48.4 bits, see alignment E=3.3e-17

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 97% identity to pct:PC1_1589)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>HER17_RS13040 MFS transporter (Pectobacterium carotovorum WPP14)
MVVTSTARTRAFLFFTIILLGLNLRPVLAGIGPLLNQIQAATGLDDSMAGMLTTLPVFAM
GWCALYGGQLQARLGEYRGITLGIVVIAVACSARWWLNSGIALLVSAALAGIGIALIQAL
VPSFIKLHFGRHSSLLMGFYTTAIMTGAAFAASSVSPLANAWGWQSALACWGIVALVAAV
AWRCIPKAYTAKQDAAAVVATRRSGMDWLLMVFFGIGTGAYTLVLAWLPPYYIQLGLDAT
QSGLMLGGLTLTEVISGLLVSTFINRFPDRRKLLLPILSVMLVGMIGLIVAPLTFTYPII
IMLGVGIGALFPLSLIVALDQVTESHKTGSLMGFVQGGGYILASLMPLLAGFIRQHTAGL
EQAWMIMAVGVVVLIIMATRFAPVKSPNR