Protein Info for HER17_RS12495 in Pectobacterium carotovorum WPP14

Annotation: putrescine ABC transporter ATP-binding subunit PotG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 PF00005: ABC_tran" amino acids 35 to 177 (143 residues), 140.7 bits, see alignment E=4.9e-45 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 50 to 375 (326 residues), 488.6 bits, see alignment E=4e-151 PF08402: TOBE_2" amino acids 295 to 375 (81 residues), 74.2 bits, see alignment E=7.5e-25

Best Hits

Swiss-Prot: 88% identical to POTG_ECOLI: Putrescine transport ATP-binding protein PotG (potG) from Escherichia coli (strain K12)

KEGG orthology group: K11076, putrescine transport system ATP-binding protein (inferred from 99% identity to pwa:Pecwa_1959)

MetaCyc: 88% identical to putrescine ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-25-RXN [EC: 7.6.2.11, 7.6.2.16]

Predicted SEED Role

"Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2)" in subsystem Polyamine Metabolism (TC 3.A.1.11.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.11 or 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>HER17_RS12495 putrescine ABC transporter ATP-binding subunit PotG (Pectobacterium carotovorum WPP14)
MNDAIPRPQSKPQKAATPLLEVRNLTKSFDGQAAVDDVSLTIYKGEIFALLGASGCGKST
LLRMLAGFELPTQGQIVLDGQDLSLVPPYQRPINMMFQSYALFPHMTVEKNIAFGLKQDK
LPRAEIKDRVEEMLSLVHMQEFANRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL
DKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH
PNTRFSAEFIGSVNMFEGILQERQDDALIIKSPGLVHPLKVDSDVSVVDGVPVYIALRPE
KIMLCEEVPADGCNFAVGEVVHIAYLGDLSIYHVRLNSGQTISAQLQNAYRYRKGTPTWG
DEVRLCWDADSCVVLTV