Protein Info for HER17_RS12480 in Pectobacterium carotovorum WPP14

Annotation: YbjO family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 84 to 108 (25 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details PF10767: YbjO_DH-like" amino acids 8 to 148 (141 residues), 219.6 bits, see alignment E=7.4e-70

Best Hits

Swiss-Prot: 39% identical to YBJO_ECOLI: Inner membrane protein YbjO (ybjO) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 95% identity to eca:ECA2673)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (150 amino acids)

>HER17_RS12480 YbjO family protein (Pectobacterium carotovorum WPP14)
MTQRKVYAPVPVMVAGIAIIATRFLGILLLVWELGLSDLSGWIGSNAEAWDSTLVLLLSL
IIVGVEIRCGFAVLAGVNWGRWGYVACQAVVVCYLLLASFSELMPAIFHISGENNAAVLH
QLLLQKIPDLLVIVLLFLPRRSKRFFTRQK