Protein Info for HER17_RS12205 in Pectobacterium carotovorum WPP14

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details amino acids 36 to 36 (1 residues), see Phobius details transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 279 to 304 (26 residues), see Phobius details PF00672: HAMP" amino acids 303 to 354 (52 residues), 31.5 bits, see alignment 1.9e-11 PF00015: MCPsignal" amino acids 418 to 573 (156 residues), 181.5 bits, see alignment E=1.3e-57

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 93% identity to eca:ECA2579)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>HER17_RS12205 methyl-accepting chemotaxis protein (Pectobacterium carotovorum WPP14)
MFLAKKIRNLKISQKLYLGFGVILLLVIIASLLSAGRFREIRDIYEKTNLIYNINIEVFQ
AKINRLKYFYSYEEKSRETMAGFVKHASELTTEAKTLSWSPEGAPLVNDLGQHLTEFQNA
ITEMGKATQRLVENRDKISTANGQNITADFYAKLRQQPSDSATQYQAEDLATQVSELKPL
SYELQLKQNADAAKKLDEAFSRFDSSYQAATAALTPEQKVAAEGLRSYVTSYKKLNADYF
QSVNDLKKAEDGVKVGGDKSSASIKALITIVKEKNDELAYGSATITMIIGLIAVVIGIII
SLLITRQITRPVIHNLSLAEKIAAGDLTSTIVADRDDELGQLTAAMGRMNEKLRHMISDV
RDSVDSVSTSAAKIAAGNSDLSSRTEQQSAAVVETAASMEELTSTVKNNAENAKQASQIS
TEASQNAHKGGEVVRDVVDTMSGISDSSRKIADITAVINSIAFQTNILALNAAVEAARAG
EQGRGFAVVASEVRTLSQRTSQAAKEIASLISESVSRINVGTQLVANAGTAMDQIVSSVS
RVNDIMGEIASASDEQSRGIEQISRAISELDTTTQQNAALVMESSISANSLEEQSAILES
MVANFRLSDHEGRKPKATLPSLPPQQKHLPPASKQTQDSGWTTF