Protein Info for HER17_RS12000 in Pectobacterium carotovorum WPP14

Annotation: cell division protein ZapC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 PF21083: ZapC_N" amino acids 2 to 89 (88 residues), 122.2 bits, see alignment E=8.1e-40 PF07126: ZapC_C" amino acids 90 to 171 (82 residues), 100.3 bits, see alignment E=5.4e-33

Best Hits

Swiss-Prot: 63% identical to ZAPC_YERPE: Cell division protein ZapC (zapC) from Yersinia pestis

KEGG orthology group: None (inferred from 96% identity to pct:PC1_1789)

Predicted SEED Role

"FIG00634120: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>HER17_RS12000 cell division protein ZapC (Pectobacterium carotovorum WPP14)
MKLKPDDNWRWYFDTEHDRLMLDLANGMLFRSRFPSKMLTPDAFNECAFCVDDAALFFTY
NDKCQKAALHRDLQGELVLNALVASRFLKPLMPKSWHFIQQPDAVTYSPQAGDVVQVQLT
ETHETACFLVAEAGDKACLCLLAQEQLSLSGKTMGLGDAIKIMHDRLMPAVVQNRAEWET
ALGEGTSAFEYAKVV