Protein Info for HER17_RS11995 in Pectobacterium carotovorum WPP14

Annotation: YcbX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 PF03476: MOSC_N" amino acids 3 to 116 (114 residues), 106.6 bits, see alignment E=1.1e-34 PF03473: MOSC" amino acids 139 to 261 (123 residues), 56 bits, see alignment E=6.6e-19 PF00111: Fer2" amino acids 292 to 361 (70 residues), 50 bits, see alignment E=3.4e-17

Best Hits

Swiss-Prot: 65% identical to YCBX_ECOLI: Uncharacterized protein YcbX (ycbX) from Escherichia coli (strain K12)

KEGG orthology group: K07140, (no description) (inferred from 96% identity to pct:PC1_1790)

MetaCyc: 65% identical to 6-N-hydroxylaminopurine resistance protein (Escherichia coli K-12 substr. MG1655)
RXN0-7398

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>HER17_RS11995 YcbX family protein (Pectobacterium carotovorum WPP14)
MIGVTRLYIHPVKSMRGLQLSHAMASVSGLANDRAFMITEPDGTFITARQYPQMVLFTPA
LLPDGLFIAAPDGQTATIRFADFTESPQPTEVWGTHFTALVAPDAINVWLSHYFQRTVQL
RWVGNEPSRRVKHYPDVPLAFADGYPFLLINDASFQALRQRCSAGIKIEQFRPNLVVTGA
EAFAEDSWKTIRIGEVIFDVVKPCSRCIFTTVSIERGRKHPSGEPLATLQSFRTAENGDV
DFGQNLVARNTGIIRVGDTLEVLATKPPRPYGSGQVVESLVVPEKSEQAVTIHYQGQSLQ
GNNQQILLEQLEQQGIRIPYSCRAGLCGCCKLTLVSGEVSALKQSAIRENGEILSCSCIP
QSDVHLQ