Protein Info for HER17_RS11420 in Pectobacterium carotovorum WPP14

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 70 to 274 (205 residues), 55.7 bits, see alignment E=2.8e-19

Best Hits

Swiss-Prot: 48% identical to YESP_BACSU: Probable ABC transporter permease protein YesP (yesP) from Bacillus subtilis (strain 168)

KEGG orthology group: K10193, oligogalacturonide transport system permease protein (inferred from 98% identity to eca:ECA2403)

Predicted SEED Role

"Putative ABC sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>HER17_RS11420 sugar ABC transporter permease (Pectobacterium carotovorum WPP14)
MNENRMLGLAYISPYIIGLIVFTAFPFVSSFILSFTEYDLINPPEFTGLENYHRMFLEDD
LFWKSMGVTFAYVFLTIPLKLIFALLIAFVLNFKLRGIGFFRTAYYVPSILGSSVAIAVL
WRALFAIDGLLNSFLGVFGFDAINWLGEPSLALMSVTLLRVWQFGSAMVIFLAALQNVPQ
SQYEAAMIDGASKWQMFLKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTY
LFSLYIYDTAFKYFDMGYGAALAWVLFLVVAVFASISFKSSKYWVFYSADKGGKNG