Protein Info for HER17_RS11260 in Pectobacterium carotovorum WPP14

Annotation: septum site-determining protein MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 TIGR01968: septum site-determining protein MinD" amino acids 2 to 268 (267 residues), 366.8 bits, see alignment E=2.8e-114 PF13614: AAA_31" amino acids 3 to 157 (155 residues), 71.8 bits, see alignment E=2.5e-23 PF09140: MipZ" amino acids 3 to 144 (142 residues), 35.8 bits, see alignment E=2e-12 PF10609: ParA" amino acids 3 to 159 (157 residues), 53.2 bits, see alignment E=1e-17 PF01656: CbiA" amino acids 5 to 227 (223 residues), 71.6 bits, see alignment E=2.1e-23 PF02374: ArsA_ATPase" amino acids 5 to 40 (36 residues), 36.7 bits, see alignment 1e-12

Best Hits

Swiss-Prot: 94% identical to MIND_ECOLI: Septum site-determining protein MinD (minD) from Escherichia coli (strain K12)

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 97% identity to eca:ECA2369)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>HER17_RS11260 septum site-determining protein MinD (Pectobacterium carotovorum WPP14)
MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF
VNVIQGDATLNQALIKDKRTDNLYILPASQTRDKDALTHEGVEKVLNDLGDMEFDFIVCD
SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILSSKSRRAERSEDPIKEHLLL
TRYNPGRVSRGDMLSMEDVLEILRIPLVGVIPEDQSVLRASNQGEPVILDAEADAGKAYA
DTVERLLGEERPFRFVEEEKKGFLKRLFGG