Protein Info for HER17_RS10830 in Pectobacterium carotovorum WPP14

Annotation: electron transport complex subunit RsxA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details TIGR01943: electron transport complex, RnfABCDGE type, A subunit" amino acids 3 to 191 (189 residues), 285 bits, see alignment E=2.2e-89 PF02508: Rnf-Nqr" amino acids 6 to 190 (185 residues), 201.7 bits, see alignment E=4.9e-64

Best Hits

Swiss-Prot: 100% identical to RNFA_PECCP: Ion-translocating oxidoreductase complex subunit A (rnfA) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K03617, electron transport complex protein RnfA (inferred from 100% identity to pct:PC1_2025)

MetaCyc: 55% identical to Rnf complex RnfA subunit (Acetobacterium woodii)
TRANS-RXN-276 [EC: 7.2.1.2]

Predicted SEED Role

"Electron transport complex protein RnfA" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>HER17_RS10830 electron transport complex subunit RsxA (Pectobacterium carotovorum WPP14)
MTEYALLFVSILLVNNFVLVKFLGLCPFMGVSKKLETAIGMGMATTFVMTVGSMFSWLVN
EFILVPLDILYLRTMAFILVLAVVVQFSEMFVRKVSPELYRLLGIFLPLITTNCAVLGVV
LLNINLSHGFLQSTIYGFGGAAGFSLVMVLFAAIRERLAVSDIPAPFRGSSIALITAGLM
SLAFMGFTGLVKF