Protein Info for HER17_RS09795 in Pectobacterium carotovorum WPP14

Annotation: EamA family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 40 to 58 (19 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 211 to 229 (19 residues), see Phobius details amino acids 238 to 260 (23 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details PF00892: EamA" amino acids 13 to 139 (127 residues), 57.8 bits, see alignment E=6.8e-20 amino acids 150 to 282 (133 residues), 68.1 bits, see alignment E=4.4e-23

Best Hits

KEGG orthology group: None (inferred from 93% identity to pct:PC1_2255)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>HER17_RS09795 EamA family transporter (Pectobacterium carotovorum WPP14)
MNTTSSPHYWRDVILTALAPAIWGSTYIVTSEILPPDRPFTAALIRVLPAGLLLLLFTRR
FPARRDWWRVLVLSALNIGVFQALLFVAAYRLPGGLAAVLGAIQPLLVMVLVWAVDHRTP
RLATLWSAIIGVVGMAILLLSPQTTFEPVGVAAALLGAVCMATGVWLTRRWQLDLPVLPL
TGWQLFLGGLMLAPVAWVVDAPLPALTLSQYAAYIYLCLAGAVISYGLWFRGITRLPTIA
VASLGLLSPLTAVVLGWVLLSQSMTGTAFLGLAIVLASVFAVQWTTARSK